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<META name="DC.description" content="This document is a consolidated, historically complete, and updated representation of all Elements, Element Refinements, Encoding Schemes, and Vocabulary Terms in MIxS namespaces in all of their historical versions both current and superseded. While this document may be useful for tracking changes in the status and attributes of terms over time, most users will need just the latest information, which is held in the document MIxS Terms: A quick reference guide at http://gensc.org/ns/mixs/terms/"/>
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<META name="DC.creator" content="MIxS Task Group"/>
<META name="DC.contributor" content="John Wieczorek (MVZ)"/>
<META name="DC.contributor" content="Pelin Yilmaz (MBI-Bremen)"/>
<META name="DC.contributor" content="Renzo Kottman (MBI-Bremen)"/>
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<center><H1>MIxS Terms: A complete historical record</H1></center>
<TABLE cellspacing="0" class="docinfo">
<TBODY>
<TR>
<TH>Title:</TH>
<TD>MIxS Terms: A complete historical record</TD>
</TR>
<TR>
<TH>Date Issued:</TH>
<TD>2013-03-26</TD>
</TR>
<TR>
<TH>Date Modified:</TH>
<TD>2013-03-26</TD>
</TR>
<TR>
<TH>Abstract:</TH>
<TD>This document is an authoritative specification of all terms in all of their historical versions as maintained by the 
MIxS Task Group. While this document is useful for complete information and for tracking changes in the status 
and attributes of terms over time, most users will need just the latest information, which is held in the document 
&quot;MIxS Terms: A quick reference guide&quot; [<a href="../index.htm">TERMS</a>].</TD>
</TR>
<TR>
<TH>Contributors:</TH>
<TD>John Wieczorek (MVZ), Pelin Yilmaz (MBI-Bremen), Renzo Kottman (MBI-Bremen)</TD>
</TR>
<TR>
<TH>Legal:</TH>
<TD>This document is governed by the standard legal, copyright, licensing provisions and disclaimers issued by the Genomics Standards Consortium.</TD>
</TR>
<TR>
<TH>Creator:</TH>
<TD>MIxS Task Group</TD>
</TR>
<TR>
<TH>Identifier:</TH>
<TD>http://gensc.org/ns/mixs/2013-03-26/terms/history/</TD>
</TR>
<TR><TH>Latest Version:</TH>
<TD><A href="http://gensc.org/ns/mixs/terms/history/index.htm">http://gensc.org/ns/mixs/terms/history/</A></TD>
</TR>
<TR>
<TH>Replaces:</TH>
<TD><A href="http://gensc.org/ns/mixs/terms/history/index.htm">http://gensc.org/ns/mixs/terms/history/</A></TD>
</TR>
<TR>
<TH>Document Status:</TH>
<TD>Draft Standard</TD>
</TR>
</TBODY></TABLE>
</TD>
</TR>
</TBODY>
</TABLE>

<a name="introduction" id="introduction"></a>
<H2>1. Introduction</H2>
<b>Audience</b>: This document is targeted toward those who wish to understand the complete specification of the MIxS terms and
their histories. Most users will not need the comprehensive historical detail presented here and should instead consult the document 
<i>MIxS Terms: A quick reference guide</i> [<A href="../index.htm">TERMS</A>], for the most current basic information on 
recommended terms. Users who want the authoritative specification of the terms should consult the full Resource Description Framework
[<A href="../../rdf/dwctermshistory.rdf">RDF</A>] document.
<P>
This document serves as a complete alphabetically ordered reference for all terms associated with the MIxS, including
historical versions. 
<!-- ================================-->
<a name="theterms" id="theterms"></a>
<H2>2. The Terms: Definitions</H2>
<P>Following is the complete list of term attributes and their definitions:
</P>
<P>
</P><TABLE width="95%" border="0" align="center">
<TBODY>
<TR>
<TD width="20%"><b>Term Name</b>:</TD>
<TD width="80%">The name by which the latest version of the term is commonly known.</TD>
</TR>
<TR>
<TD width="20%"><b>Identifier</b>:</TD>
<TD width="80%">The unique identifier for the latest version of the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Namespace</b>:</TD>
<TD width="80%">The namespace (MIxS, Darwin Core, Dublin Core) within which the term is defined. The combination of the namespace and the version make a unique identifier for the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Label</b>:</TD>
<TD width="80%">The commonly used label for the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Definition</b>:</TD>
<TD width="80%">A description of the nature of the content of the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Comment</b>:</TD>
<TD width="80%">Further commentary about the usage of the term, with examples and a reference to further information.</TD>
</TR>
<TR>
<TD width="20%"><b>Type of Term</b>:</TD>
<TD width="80%">The category (property, class, vocabulary encoding scheme, or datatype - syntax encoding scheme) to which the term belongs.</TD>
</TR>
<TR>
<TD width="20%"><b>Refines</b>:</TD>
<TD width="80%">The name of a term of which this term is a refined (more specialized) version.</TD>
</TR>
<TR>
<TD width="20%"><b>Status</b>:</TD>
<TD width="80%">The status of the term - deprecated (not recommended for use), superseded (not recommended for use - replaced by 
the term or terms shown in the <i>Is Replaced By</i> column), or recommended (ready for use).</TD>
</TR>
<TR>
<TD width="20%"><b>Date Issued</b>:</TD>
<TD width="80%">Date on which the term was first published.</TD>
</TR>
<TR>
<TD width="20%"><b>Date Modified</b>:</TD>
<TD width="80%">Date on which the term was last changed in any way that would change its meaning or use.</TD>
</TR>
<TR>
<TD width="20%"><b>Member Of</b>:</TD>
<TD width="80%">The Class of which this term is a member.</TD>
</TR>
<TR>
<TD width="20%"><b>Has Domain</b>:</TD>
<TD width="80%">A Class of which a resource described by the term is a property.</TD>
</TR>
<TR>
<TD width="20%"><b>Has Range</b>:</TD>
<TD width="80%">A Class of which a value described by the term is an instance.</TD>
</TR>
<TR>
<TD width="20%"><b>Decision</b>:</TD>
<TD width="80%">The reference to the published decision that resulted in the current version of the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Version</b>:</TD>
<TD width="80%">The identifier for the specific version of the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Replaces</b>:</TD>
<TD width="80%">The identifier of the previous version of the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Is Replaced By</b>:</TD>
<TD width="80%">The identifier of the next newer version of the term.</TD>
</TR>
<TR>
<TD width="20%"><b>Class</b>:</TD>
<TD width="80%">The primary category of terms (Class) that this term describes.</TD>
</TR>
<TR>
<TD width="20%"><b>ABCD 2.06</b>:</TD>
<TD width="80%">The xpath(s) to the equivalent concept(s) in the Access to Biological Collections Data schema version 2.06.</TD>
</TR>
</TBODY></TABLE>
<P>

<TABLE cellspacing="0" class="border">
<TBODY>

<!-- Begin Term Table -->

<TR><TH colspan="2"><A name="adapters-2011-01-26">Term Name: adapters</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/adapters</TD></TR> <TR><TD>INSDC Label:</TD><TD>adapters</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>adapters</TD></TR> <TR><TD>Definition:</TD><TD>Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>adapters-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="alt_elev-2011-01-26">Term Name: alt_elev</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/alt_elev</TD></TR> <TR><TD>INSDC Label:</TD><TD>alt_elev</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>geographic location (altitude/elevation)</TD></TR> <TR><TD>Definition:</TD><TD>Please refer to the definitions of either altitude or elevation in the environmental packages</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>alt_elev-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#verbatimElevation-2009-04-24">verbatimElevation-2009-04-24</a></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>
<TR><TH colspan="2"><A name="annot_source-2011-01-26">Term Name: annotationSource</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/annotationSource</TD></TR> <TR><TD>INSDC Label:</TD><TD>annot_source</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>annotation source</TD></TR> <TR><TD>Definition:</TD><TD>For cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>annot_source-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="assembly_name-2011-01-26">Term Name: assemblyName</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/assemblyName</TD></TR> <TR><TD>INSDC Label:</TD><TD>assembly_name</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>assembly name</TD></TR> <TR><TD>Definition:</TD><TD>Name/version of the assembly provided by the submitter that is used in the genome browsers and in the community</TD></TR> <TR><TD>Comment:</TD><TD>HuRef, JCVI_ISG_i3_1.0</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>assembly_name-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="assembly-2011-01-26">Term Name: assembly</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/assembly</TD></TR> <TR><TD>INSDC Label:</TD><TD>assembly</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>assembly</TD></TR> <TR><TD>Definition:</TD><TD>How was the assembly done (e.g. with a text based assembler like phrap or a flowgram assembler); estimated error rate associated with the finished sequences (e.g. error rate of 1 in 1000 bp); and the method of calculation</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>assembly-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="associatedReferences-2009-04-24">Term Name: associatedReferences</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/associatedReferences</TD></TR> <TR><TD>INSDC Label:</TD><TD>url</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Associated References</TD></TR> <TR><TD>Definition:</TD><TD>A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier, URI) of literature associated with the Occurrence.</TD></TR> <TR><TD>Comment:</TD><TD>Examples: "http://www.sciencemag.org/cgi/content/abstract/322/5899/261", "Christopher J. Conroy, Jennifer L. Neuwald. 2008. Phylogeographic study of the California vole, Microtus californicus Journal of Mammalogy, 89(3):755-767.". For discussion see <a href="http://code.google.com/p/darwincore/wiki/Occurrence">http://code.google.com/p/darwincore/wiki/Occurrence</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-04-24</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>associatedReferences-2009-04-24</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#url-2011-01-26">url-2011-01-26</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://rs.tdwg.org/dwc/terms/Occurrence</TD></TR>
<TR><TH colspan="2"><A name="bioticRelationship-2011-01-26">Term Name: bioticRelationship</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/bioticRelationship</TD></TR> <TR><TD>INSDC Label:</TD><TD>biotic_relationship</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>observed biotic relationship</TD></TR> <TR><TD>Definition:</TD><TD>Is it free-living or in a host and if the latter what type of relationship is observed</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>bioticRelationship-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="chimera_check-2011-01-26">Term Name: chimeraCheck</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/chimeraCheck</TD></TR> <TR><TD>INSDC Label:</TD><TD>chimera_check</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>chimera check</TD></TR> <TR><TD>Definition:</TD><TD>A chimeric sequence, or chimera for short, is a sequence comprised of two or more phylogenetically distinct parent sequences. Chimeras are usually PCR artifacts thought to occur when a prematurely terminated amplicon reanneals to a foreign DNA strand and is copied to completion in the following PCR cycles. The point at which the chimeric sequence changes from one parent to the next is called the breakpoint or conversion point</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>chimera_check-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="collection_date-2011-01-26">Term Name: collection_date</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/collection_date</TD></TR> <TR><TD>INSDC Label:</TD><TD>collection_date</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>collection date</TD></TR> <TR><TD>Definition:</TD><TD>The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>collection_date-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#eventDate-2009-04-24">eventDate-2009-04-24</a></TD></TR> <TR><TD>Class:</TD><TD>http://rs.tdwg.org/dwc/terms/Event</TD></TR>
<TR><TH colspan="2"><A name="collectionCode-2009-09-11">Term Name: collectionCode</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/collectionCode</TD></TR> <TR><TD>INSDC Label:</TD><TD>source_mat_id</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Collection Code</TD></TR> <TR><TD>Definition:</TD><TD>The name, acronym, coden, or initialism identifying the collection or data set from which the record was derived.</TD></TR> <TR><TD>Comment:</TD><TD>Examples: "Mammals", "Hildebrandt", "eBird". For discussion see <a href="http://code.google.com/p/darwincore/wiki/RecordLevelTerms">http://code.google.com/p/darwincore/wiki/RecordLevelTerms</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD>http://rs.tdwg.org/ncd/terms/Collection#Code</TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-09-11</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>collectionCode-2009-09-11</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#source_mat_id-2011-01-26">source_mat_id-2011-01-26</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>all</TD></TR>
<TR><TH colspan="2"><A name="datasetName-2009-09-11">Term Name: datasetName</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/datasetName</TD></TR> <TR><TD>INSDC Label:</TD><TD>project_name</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Dataset Name</TD></TR> <TR><TD>Definition:</TD><TD>The name identifying the data set from which the record was derived.</TD></TR> <TR><TD>Comment:</TD><TD>Examples: "Grinnell Resurvey Mammals", "Lacey Ctenomys Recaptures". For discussion see <a href="http://code.google.com/p/darwincore/wiki/RecordLevelTerms">http://code.google.com/p/darwincore/wiki/RecordLevelTerms</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2009-09-11</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-09-11</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>datasetName-2009-09-11</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>all</TD></TR>
<TR><TH colspan="2"><A name="dcterms:Location">Term Name: dcterms:Location</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://purl.org/dc/terms/Location</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://purl.org/dc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Location</TD></TR> <TR><TD>Definition:</TD><TD>A spatial region or named place. For Darwin Core, a set of terms describing a place, whether named or not.</TD></TR> <TR><TD>Comment:</TD><TD> For discussion see <a href="http://code.google.com/p/darwincore/wiki/Location">http://code.google.com/p/darwincore/wiki/Location</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-01-14</TD></TR> <TR><TD>Date Modified:</TD><TD>2008-01-14</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>http://dublincore.org/documents/dcmi-terms/#classes-Location</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#SamplingLocation-2008-11-19">SamplingLocation-2008-11-19</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="depth-2011-01-26">Term Name: depth</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/depth</TD></TR> <TR><TD>INSDC Label:</TD><TD>depth</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>geographic location (depth)</TD></TR> <TR><TD>Definition:</TD><TD>Please refer to the definitions of depth in the environmental packages</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>depth-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#verbatimDepth-2009-04-24">verbatimDepth-2009-04-24</a></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>
<TR><TH colspan="2"><A name="encoded_traits-2011-01-26">Term Name: encodedTraits</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/encodedTraits</TD></TR> <TR><TD>INSDC Label:</TD><TD>encoded_traits</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>encoded traits</TD></TR> <TR><TD>Definition:</TD><TD>Should include key traits like antibiotic resistance or xenobiotic degradation phenotypes for plasmids, converting genes for phage</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>encoded_traits-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="env_biome-2011-01-26">Term Name: environmentBiome</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/environmentBiome</TD></TR> <TR><TD>INSDC Label:</TD><TD>env_biome</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>environment (biome)</TD></TR> <TR><TD>Definition:</TD><TD>In environmental biome level are the major classes of ecologically similar communities of plants, animals, and other organisms. Biomes are defined based on factors such as plant structures, leaf types, plant spacing, and other factors like climate. Examples include: desert, taiga, deciduous woodland, or coral reef. EnvO (v1.53) terms listed under environmental biome can be found from the link: http://bioportal.bioontology.org/visualize/44405/?conceptid=ENVO%3A00000428</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>env_biome-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Environment</TD></TR>
<TR><TH colspan="2"><A name="env_feature-2011-01-26">Term Name: environmentFeature</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/environmentFeature</TD></TR> <TR><TD>INSDC Label:</TD><TD>env_feature</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>environment (feature)</TD></TR> <TR><TD>Definition:</TD><TD>Environmental feature level includes geographic environmental features. Examples include: harbor, cliff, or lake. EnvO (v1.53) terms listed under environmental feature can be found from the link: http://bioportal.bioontology.org/visualize/44405/?conceptid=ENVO%3A00002297</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>env_feature-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Environment</TD></TR>
<TR><TH colspan="2"><A name="env_material-2011-01-26">Term Name: environmentMaterial</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/environmentMaterial</TD></TR> <TR><TD>INSDC Label:</TD><TD>env_material</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>environment (material)</TD></TR> <TR><TD>Definition:</TD><TD>The environmental material level refers to the matter that was displaced by the sample, prior to the sampling event. Environmental matter terms are generally mass nouns. Examples include: air, soil, or water. EnvO (v1.53) terms listed under environmental matter can be found from the link: http://bioportal.bioontology.org/visualize/44405/?conceptid=ENVO%3A00010483</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>env_material-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Environment</TD></TR>
<TR><TH colspan="2"><A name="env_package-2011-01-26">Term Name: environmentalPackage</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/environmentalPackage</TD></TR> <TR><TD>INSDC Label:</TD><TD>env_package</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>environmental package</TD></TR> <TR><TD>Definition:</TD><TD>MIGS/MIMS/MIENS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>env_package-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Environment</TD></TR>
<TR><TH colspan="2"><A name="Environment-2013-03-26">Term Name: Enviroment</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/Enviroment</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>Environment</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to environment.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2013-03-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>Environment-2013-03-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="estimated_size-2011-01-26">Term Name: estimatedSize</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/estimatedSize</TD></TR> <TR><TD>INSDC Label:</TD><TD>estimated_size</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>estimated size</TD></TR> <TR><TD>Definition:</TD><TD>The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period.</TD></TR> <TR><TD>Comment:</TD><TD>300000 bp</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>estimated_size-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="Event-2009-04-29">Term Name: Event</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/Event</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Event</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to an event (an action that occurs at a place and during a period of time).</TD></TR> <TR><TD>Comment:</TD><TD> For discussion see <a href="http://code.google.com/p/darwincore/wiki/Event">http://code.google.com/p/darwincore/wiki/Event</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-04-29</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>Event-2009-04-29</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#SamplingEvent-2008-11-19">SamplingEvent-2008-11-19</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="eventDate-2009-04-24">Term Name: eventDate</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/eventDate</TD></TR> <TR><TD>INSDC Label:</TD><TD>collection_date</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Event Date</TD></TR> <TR><TD>Definition:</TD><TD>The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context. Recommended best practice is to use an encoding scheme, such as ISO 8601:2004(E).</TD></TR> <TR><TD>Comment:</TD><TD>Examples: "1963-03-08T14:07-0600" is 8 Mar 1963 2:07pm in the time zone six hours earlier than UTC, "2009-02-20T08:40Z" is 20 Feb 2009 8:40am UTC, "1809-02-12" is 12 Feb 1809, "1906-06" is Jun 1906, "1971" is just that year, "2007-03-01T13:00:00Z/2008-05-11T15:30:00Z" is the interval between 1 Mar 2007 1pm UTC and 11 May 2008 3:30pm UTC, "2007-11-13/15" is the interval between 13 Nov 2007 and 15 Nov 2007. For discussion see <a href="http://code.google.com/p/darwincore/wiki/Event">http://code.google.com/p/darwincore/wiki/Event</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD>http://purl.org/dc/terms/date</TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2009-04-24</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-07-01</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>eventDate-2009-04-24</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#EarliestDateCollected-2007-04-17">EarliestDateCollected-2007-04-17</a>, <a href="./index.htm#LatestDateCollected-2007-04-17">LatestDateCollected-2007-04-17</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://rs.tdwg.org/dwc/terms/Event</TD></TR>
<TR><TH colspan="2"><A name="experimental_factor-2011-01-26">Term Name: experimentalFactor</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/experimentalFactor</TD></TR> <TR><TD>INSDC Label:</TD><TD>experimental_factor</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>experimental factor</TD></TR> <TR><TD>Definition:</TD><TD>Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v132) terms, please see http://bioportal.bioontology.org/visualize/44641; for a browser of OBI (v1.0) terms please see http://bioportal.bioontology.org/visualize/40832</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>experimental_factor-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Investigation</TD></TR>
<TR><TH colspan="2"><A name="extrachrom_elements-2011-01-26">Term Name: extrachromosomalElements</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/extrachromosomalElements</TD></TR> <TR><TD>INSDC Label:</TD><TD>extrachrom_elements</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>extrachromosomal elements</TD></TR> <TR><TD>Definition:</TD><TD>Do plasmids exist of significant phenotypic consequence (e.g. ones that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids (borrelia has 15+ plasmids)</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>extrachrom_elements-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="finishing_strategy-2011-01-26">Term Name: finishingStrategy</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/finishingStrategy</TD></TR> <TR><TD>INSDC Label:</TD><TD>finishing_strategy</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>finishing strategy</TD></TR> <TR><TD>Definition:</TD><TD>Was the genome project intended to produce a complete or draft genome, Coverage, the fold coverage of the sequencing expressed as 2x, 3x, 18x  etc, and how many contigs were produced for the genome</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>finishing_strategy-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="geo_loc_name-2011-01-26">Term Name: geo_loc_name</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/geo_loc_name</TD></TR> <TR><TD>INSDC Label:</TD><TD>geo_loc_name</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>geographic location (country and/or sea,region)</TD></TR> <TR><TD>Definition:</TD><TD>The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (<a href="http://insdc.org/country.html), or the GAZ ontology (v1.446) (http://bioportal.bioontology.org/visualize/4065">http://insdc.org/country.html), or the GAZ ontology (v1.446) (http://bioportal.bioontology.org/visualize/4065</a>), or the GAZ ontology (v1.446) (http://bioportal.bioontology.org/visualize/40651)</TD></TR> <TR><TD>Comment:</TD><TD>Germany:Sylt:Hausstrand</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>geo_loc_name-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#locality-2009-04-24">locality-2009-04-24</a></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>
<TR><TH colspan="2"><A name="health_disease_stat-2011-01-26">Term Name: healthDiseaseStatus</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/healthDiseaseStatus</TD></TR> <TR><TD>INSDC Label:</TD><TD>health_disease_stat</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>health or disease status of specific host at time of collection</TD></TR> <TR><TD>Definition:</TD><TD>Health or disease status of specific host at time of collection. This field accepts PATO (v1.269) terms, for a browser please see http://bioportal.bioontology.org/visualize/44601
</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>health_disease_stat-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="host_spec_range-2011-01-26">Term Name: hostSpecificityOrRange</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/hostSpecificityOrRange</TD></TR> <TR><TD>INSDC Label:</TD><TD>host_spec_range</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>host specificity or range</TD></TR> <TR><TD>Definition:</TD><TD>The NCBI taxonomy identifier of the specific host if it is known</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>host_spec_range-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="investigation_type-2011-01-26">Term Name: investigationType</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/investigationType</TD></TR> <TR><TD>INSDC Label:</TD><TD>investigation_type</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>investigation type</TD></TR> <TR><TD>Definition:</TD><TD>Nucleic Acid Sequence Report is the root element of all MIGS/MIMS compliant reports as standardized by Genomic Standards Consortium. This field is either eukaryote,bacteria,virus,plasmid,organelle, metagenome, miens-survey or miens-specimen</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>investigation_type-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Investigation</TD></TR>
<TR><TH colspan="2"><A name="Investigation-2013-03-26">Term Name: Investigation</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/Investigation</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>Investigation</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to an investigation.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2013-03-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>Investigation-2013-03-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="isol_growth_condt-2011-01-26">Term Name: isol_growth_condt</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/isol_growth_condt</TD></TR> <TR><TD>INSDC Label:</TD><TD>isol_growth_condt</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>isolation and growth condition</TD></TR> <TR><TD>Definition:</TD><TD>Publication reference in the form of pubmed ID (pmid), digital object identifier (doi) or url for isolation and growth condition specifications of the organism/material</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>isol_growth_condt-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#samplingProtocol-2009-04-24">samplingProtocol-2009-04-24</a></TD></TR> <TR><TD>Class:</TD><TD>http://rs.tdwg.org/dwc/terms/Event</TD></TR>
<TR><TH colspan="2"><A name="lat_lon-2011-01-26">Term Name: lat_lon</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/lat_lon</TD></TR> <TR><TD>INSDC Label:</TD><TD>lat_lon</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>geographic location (latitude and longitude)</TD></TR> <TR><TD>Definition:</TD><TD>The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>lat_lon-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#verbatimCoordinates-2009-04-24">verbatimCoordinates-2009-04-24</a></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>
<TR><TH colspan="2"><A name="lib_const_meth-2011-01-26">Term Name: libraryConstructionMethod</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/libraryConstructionMethod</TD></TR> <TR><TD>INSDC Label:</TD><TD>lib_const_meth</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>library construction method</TD></TR> <TR><TD>Definition:</TD><TD>Library construction method used for clone libraries</TD></TR> <TR><TD>Comment:</TD><TD>paired-end,single,vector</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>lib_const_meth-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="lib_reads_seqd-2011-01-26">Term Name: libraryReadsSequenced</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/libraryReadsSequenced</TD></TR> <TR><TD>INSDC Label:</TD><TD>lib_reads_seqd</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>library reads sequenced</TD></TR> <TR><TD>Definition:</TD><TD>Total number of clones sequenced from the library</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>lib_reads_seqd-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="lib_screen-2011-01-26">Term Name: libraryScreeningStrategy</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/libraryScreeningStrategy</TD></TR> <TR><TD>INSDC Label:</TD><TD>lib_screen</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>library screening strategy</TD></TR> <TR><TD>Definition:</TD><TD>Specific enrichment or screening methods applied before and/or after creating clone libraries</TD></TR> <TR><TD>Comment:</TD><TD>enriched, screened, normalized</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>lib_screen-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="lib_size-2011-01-26">Term Name: librarySize</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/librarySize</TD></TR> <TR><TD>INSDC Label:</TD><TD>lib_size</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>library size</TD></TR> <TR><TD>Definition:</TD><TD>Total number of clones in the library prepared for the project</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>lib_size-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="lib_vector-2011-01-26">Term Name: libraryVector</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/libraryVector</TD></TR> <TR><TD>INSDC Label:</TD><TD>lib_vector</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>library vector</TD></TR> <TR><TD>Definition:</TD><TD>Cloning vector type(s) used in construction of libraries</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>lib_vector-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="locality-2009-04-24">Term Name: locality</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/locality</TD></TR> <TR><TD>INSDC Label:</TD><TD>geo_loc_name</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Locality</TD></TR> <TR><TD>Definition:</TD><TD>The specific description of the place. Less specific geographic information can be provided in other geographic terms (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description.</TD></TR> <TR><TD>Comment:</TD><TD>Example: "Bariloche, 25 km NNE via Ruta Nacional 40 (=Ruta 237)". For discussion see <a href="http://code.google.com/p/darwincore/wiki/Location">http://code.google.com/p/darwincore/wiki/Location</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-04-24</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>locality-2009-04-24</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#locality-2009-04-24">locality-2009-04-24</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>
<TR><TH colspan="2"><A name="materialSampleID-2013-03-28">Term Name: materialSampleID</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/materialSampleID</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>Material Sample ID</TD></TR> <TR><TD>Definition:</TD><TD>An identifier for the MaterialSample (as opposed to a particular digital record of the material sample). In the absence of a persistent global unique identifier, construct one from a combination of identifiers in the record that will most closely make the materialSampleID globally unique.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD>http://purl.org/dc/terms/identifier</TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2013-03-28</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-28</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>materialSampleID-2013-03-28</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://purl.obolibrary.org/obo/OBI_0000747</TD></TR>
<TR><TH colspan="2"><A name="mid-2011-01-26">Term Name: multiplexIdentifiers</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/multiplexIdentifiers</TD></TR> <TR><TD>INSDC Label:</TD><TD>mid</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>multiplex identifiers</TD></TR> <TR><TD>Definition:</TD><TD>Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to specifically tag unique samples in a sequencing run. Sequence should be reported in uppercase letters</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>mid-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="nucl_acid_amp-2011-01-26">Term Name: nucleicAcidAmplification</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/nucleicAcidAmplification</TD></TR> <TR><TD>INSDC Label:</TD><TD>nucl_acid_amp</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>nucleic acid amplification</TD></TR> <TR><TD>Definition:</TD><TD>Link to a literature reference, electronic resource or a standard operating procedure (SOP)</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>nucl_acid_amp-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="nucl_acid_ext-2011-01-26">Term Name: nucleicAcidExtraction</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/nucleicAcidExtraction</TD></TR> <TR><TD>INSDC Label:</TD><TD>nucl_acid_ext</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>nucleic acid extraction</TD></TR> <TR><TD>Definition:</TD><TD>Link to a literature reference, electronic resource or a standard operating procedure (SOP)</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>nucl_acid_ext-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="NucleicAcidSequenceSource-2013-03-26">Term Name: NucleicAcidSequenceSource</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/NucleicAcidSequenceSource</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>NucleicAcidSequenceSource</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to nucleic acid sequence source.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2013-03-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>NucleicAcidSequenceSource-2013-03-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="num_replicons-2011-01-26">Term Name: numberOfReplicons</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/numberOfReplicons</TD></TR> <TR><TD>INSDC Label:</TD><TD>num_replicons</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>number of replicons</TD></TR> <TR><TD>Definition:</TD><TD>Reports the number of replicons in a nuclear genome of eukaryotes, in the genome of a bacterium or archaea or the number of segments in a segmented virus. Always applied to the haploid chromosome count of a eukaryote</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>num_replicons-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="OBI_0000747">Term Name: MaterialSample</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://purl.obolibrary.org/obo/OBI_0000747</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://purl.obolibrary.org/obo/</TD></TR> <TR><TD>Label:</TD><TD>Material Sample</TD></TR> <TR><TD>Definition:</TD><TD>A material entity that has the material sample role.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2013-03-28</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-28</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>OBI_0000747</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="Occurrence-2009-04-29">Term Name: Occurrence</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/Occurrence</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Occurrence</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to evidence of an occurrence in nature, in a collection, or in a dataset (specimen, observation, etc.).</TD></TR> <TR><TD>Comment:</TD><TD> For discussion see <a href="http://code.google.com/p/darwincore/wiki/Occurrence">http://code.google.com/p/darwincore/wiki/Occurrence</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-04-24</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>Occurrence-2009-04-29</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#Sample-2008-11-19">Sample-2008-11-19</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="pathogenicity-2011-01-26">Term Name: pathogenicity</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/pathogenicity</TD></TR> <TR><TD>INSDC Label:</TD><TD>pathogenicity</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>known pathogenicity</TD></TR> <TR><TD>Definition:</TD><TD>To what is the entity pathogenic.</TD></TR> <TR><TD>Comment:</TD><TD>human, animal, plant, fungi, bacteria</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>pathogenicity-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="pcr_cond-2011-01-26">Term Name: pcrConditions</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/pcrConditions</TD></TR> <TR><TD>INSDC Label:</TD><TD>pcr_cond</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>pcr conditions</TD></TR> <TR><TD>Definition:</TD><TD>Description of reaction conditions and components for PCR in the form of  'initial denaturation:94degC_1.5min; annealing=...'</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>pcr_cond-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="pcr_primers-2011-01-26">Term Name: pcrPrimers</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/pcrPrimers</TD></TR> <TR><TD>INSDC Label:</TD><TD>pcr_primers</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>pcr primers</TD></TR> <TR><TD>Definition:</TD><TD>PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>pcr_primers-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="ploidy-2011-01-26">Term Name: ploidy</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/ploidy</TD></TR> <TR><TD>INSDC Label:</TD><TD>ploidy</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>ploidy</TD></TR> <TR><TD>Definition:</TD><TD>The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, triploid, tetraploid). It has implications for the downstream study of duplicated gene and regions of the genomes (and perhaps for difficulties in assembly). For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic Quality Ontology (PATO), and for a browser of PATO (v1.269) please refer to http://bioportal.bioontology.org/visualize/44601/?conceptid=PATO%3A0001374</TD></TR> <TR><TD>Comment:</TD><TD>allopolyploid, polyploid</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>ploidy-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="project_name-2011-01-26">Term Name: project_name</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/project_name</TD></TR> <TR><TD>INSDC Label:</TD><TD>project_name</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>project name</TD></TR> <TR><TD>Definition:</TD><TD>Name of the project within which the sequencing was organized</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>project_name-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#datasetName-2009-09-11">datasetName-2009-09-11</a></TD></TR> <TR><TD>Class:</TD><TD>all</TD></TR>
<TR><TH colspan="2"><A name="propagation-2011-01-26">Term Name: propagation</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/propagation</TD></TR> <TR><TD>INSDC Label:</TD><TD>propagation</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>propagation</TD></TR> <TR><TD>Definition:</TD><TD>This field is specific to different taxa. For phages: lytic/lysogenic, for plasmids: incompatibility group (Note: there is the strong opinion to name phage propagation obligately lytic or temperate, therefore we also give this choice</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>propagation-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="ref_biomaterial-2011-01-26">Term Name: referenceForBiomaterial</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/referenceForBiomaterial</TD></TR> <TR><TD>INSDC Label:</TD><TD>ref_biomaterial</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>reference for biomaterial</TD></TR> <TR><TD>Definition:</TD><TD>primary publication if isolated before genome publication; otherwise, primary genome report</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>ref_biomaterial-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="rel_to_oxygen-2011-01-26">Term Name: relationshipToOxygen</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/relationshipToOxygen</TD></TR> <TR><TD>INSDC Label:</TD><TD>rel_to_oxygen</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>relationship to oxygen</TD></TR> <TR><TD>Definition:</TD><TD>Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments</TD></TR> <TR><TD>Comment:</TD><TD>'</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>rel_to_oxygen-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="samp_collect_device-2011-01-26">Term Name: sampleCollectionDeviceOrMethod</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/sampleCollectionDeviceOrMethod</TD></TR> <TR><TD>INSDC Label:</TD><TD>samp_collect_device</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>sample collection device or method</TD></TR> <TR><TD>Definition:</TD><TD>The method or device employed for collecting the sample</TD></TR> <TR><TD>Comment:</TD><TD>biopsy, niskin bottle, push core</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>samp_collect_device-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="samp_mat_process-2011-01-26">Term Name: sampleMaterialProcessing</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/sampleMaterialProcessing</TD></TR> <TR><TD>INSDC Label:</TD><TD>samp_mat_process</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>sample material processing</TD></TR> <TR><TD>Definition:</TD><TD>Any processing applied to the sample during or after retrieving the sample from environment. This field accepts OBI, for a browser of OBI (v1.0) terms please see http://bioportal.bioontology.org/visualize/40832</TD></TR> <TR><TD>Comment:</TD><TD>filtering of seawater, storing samples in ethanol</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>samp_mat_process-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="samp_size-2011-01-26">Term Name: sampleSize</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/sampleSize</TD></TR> <TR><TD>INSDC Label:</TD><TD>samp_size</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>amount or size of sample collected</TD></TR> <TR><TD>Definition:</TD><TD>Amount or size of sample (volume, mass or area) that was collected</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>samp_size-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="Sample-2011-01-26">Term Name: Sample</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/Sample</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>Sample</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to the results of a sampling event.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>Sample-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="samplingProtocol-2009-04-24">Term Name: samplingProtocol</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/samplingProtocol</TD></TR> <TR><TD>INSDC Label:</TD><TD>isol_growth_condt</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Sampling Protocol</TD></TR> <TR><TD>Definition:</TD><TD>The name of, reference to, or description of the method or protocol used during an Event.</TD></TR> <TR><TD>Comment:</TD><TD>Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see <a href="http://code.google.com/p/darwincore/wiki/Event">http://code.google.com/p/darwincore/wiki/Event</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-04-24</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>samplingProtocol-2009-04-24</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#isol_growth_condt-2011-01-26">isol_growth_condt-2011-01-26</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://rs.tdwg.org/dwc/terms/Event</TD></TR>
<TR><TH colspan="2"><A name="seq_meth-2011-01-26">Term Name: sequencingMethod</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/sequencingMethod</TD></TR> <TR><TD>INSDC Label:</TD><TD>seq_meth</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>sequencing method</TD></TR> <TR><TD>Definition:</TD><TD>Sequencing method used; e.g. Sanger, pyrosequencing, ABI-solid</TD></TR> <TR><TD>Comment:</TD><TD>Sanger dideoxysequencing, pyrosequencing, polony</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>seq_meth-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="seq_quality_check-2011-01-26">Term Name: sequenceQualityCheck</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/sequenceQualityCheck</TD></TR> <TR><TD>INSDC Label:</TD><TD>seq_quality_check</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>sequence quality check</TD></TR> <TR><TD>Definition:</TD><TD>Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>seq_quality_check-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="Sequencing-2013-03-26">Term Name: Sequencing</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/Sequencing</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>Sequencing</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to sequencing.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2013-03-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>Sequencing-2013-03-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="sop-2011-01-26">Term Name: standardOperatingProcedures</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/standardOperatingProcedures</TD></TR> <TR><TD>INSDC Label:</TD><TD>sop</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>relevant standard operating procedures</TD></TR> <TR><TD>Definition:</TD><TD>Standard operating procedures used in assembly and/or annotation of genomes, metagenomes or environmental sequences</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>sop-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="source_mat_id-2011-01-26">Term Name: source_mat_id</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/source_mat_id</TD></TR> <TR><TD>INSDC Label:</TD><TD>source_mat_id</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>source material identifiers</TD></TR> <TR><TD>Definition:</TD><TD>The name of the culture collection, holder of the voucher or an institution. Could enumerate a list of common resources, just as the American Type Culture Collection (ATCC), German Collection of Microorganisms and Cell Cultures (DSMZ) etc. Can select not deposited</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>source_mat_id-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#collectionCode-2009-09-11">collectionCode-2009-09-11</a></TD></TR> <TR><TD>Class:</TD><TD>all</TD></TR>
<TR><TH colspan="2"><A name="specific_host-2011-01-26">Term Name: specificHost</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/specificHost</TD></TR> <TR><TD>INSDC Label:</TD><TD>specific_host</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>specific host</TD></TR> <TR><TD>Definition:</TD><TD>If there is a host involved, please provide its taxid (or environmental if not actually isolated from the dead or alive host - i.e. pathogen could be isolated from a swipe of a bench etc) and report whether it is a laboratory or natural host). From this we can calculate any number of groupings of hosts (e.g. animal vs plant, all fish hosts, etc)</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>specific_host-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="submitted_to_insdc-2011-01-26">Term Name: submittedToINSDC</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/submittedToINSDC</TD></TR> <TR><TD>INSDC Label:</TD><TD>submitted_to_insdc</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>submitted to insdc</TD></TR> <TR><TD>Definition:</TD><TD>Depending on the study (large-scale e.g. done with next generation sequencing technology, or small-scale) sequences have to be submitted to SRA (Sequence Read Archive), DRA (DDBJ Read Archive) or via the classical Webin/Sequin systems to Genbank, ENA and DDBJ.
Although this field is mandatory, it is meant as a "self-test" field, therefore it is not necessary to include this field in contextual data submitted to databases</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>submitted_to_insdc-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Investigation</TD></TR>
<TR><TH colspan="2"><A name="subspecf_gen_lin-2011-01-26">Term Name: subspecificGeneticLineage</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/subspecificGeneticLineage</TD></TR> <TR><TD>INSDC Label:</TD><TD>subspecf_gen_lin</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>subspecific genetic lineage</TD></TR> <TR><TD>Definition:</TD><TD>This should provide further information about the genetic distinctness of this lineage by recording additional information i.e biovar, serovar, serotype, biovar, or any relevant genetic typing schemes like Group I plasmid. It can also contain alternative taxonomic information</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>subspecf_gen_lin-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="target_gene-2011-01-26">Term Name: targetGene</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/targetGene</TD></TR> <TR><TD>INSDC Label:</TD><TD>target_gene</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>target gene</TD></TR> <TR><TD>Definition:</TD><TD>Targeted gene or locus name for marker gene studies</TD></TR> <TR><TD>Comment:</TD><TD>16S rRNA, 18S rRNA, nif, amoA, rpo</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>target_gene-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="target_subfragment-2011-01-26">Term Name: targetSubfragment</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/targetSubfragment</TD></TR> <TR><TD>INSDC Label:</TD><TD>target_subfragment</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>target subfragment</TD></TR> <TR><TD>Definition:</TD><TD>Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA</TD></TR> <TR><TD>Comment:</TD><TD>V6, V9, ITS</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>target_subfragment-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/Sequencing</TD></TR>
<TR><TH colspan="2"><A name="TaxonAbundance-2011-01-26">Term Name: TaxonAbundance</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/TaxonAbundance</TD></TR> <TR><TD>INSDC Label:</TD><TD></TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>TaxonAbundance</TD></TR> <TR><TD>Definition:</TD><TD>The category of information pertaining to the abundance of taxa.</TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/2000/01/rdf-schema#Class</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2013-03-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>TaxonAbundance-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD></TD></TR>
<TR><TH colspan="2"><A name="trophic_level-2011-01-26">Term Name: trophicLevel</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/trophicLevel</TD></TR> <TR><TD>INSDC Label:</TD><TD>trophic_level</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>trophic level</TD></TR> <TR><TD>Definition:</TD><TD>Trophic levels are the feeding position in a food chain. Microbes can be a range of producers (e.g. chemolithotroph)</TD></TR> <TR><TD>Comment:</TD><TD>"</TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>trophic_level-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://gensc.org/ns/mixs/terms/NucleicAcidSequenceSource</TD></TR>
<TR><TH colspan="2"><A name="url-2011-01-26">Term Name: url</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://gensc.org/ns/mixs/url</TD></TR> <TR><TD>INSDC Label:</TD><TD>url</TD></TR> <TR><TD>Namespace:</TD><TD>http://gensc.org/ns/mixs/</TD></TR> <TR><TD>Label:</TD><TD>relevant electronic resources</TD></TR> <TR><TD>Definition:</TD><TD></TD></TR> <TR><TD>Comment:</TD><TD></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>deprecated</TD></TR> <TR><TD>Date Issued:</TD><TD>2011-01-26</TD></TR> <TR><TD>Date Modified:</TD><TD>2011-01-26</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>url-2011-01-26</TD></TR> <TR><TD>Replaces:</TD><TD></TD></TR> <TR><TD>Is Replaced By:</TD><TD><a href="./index.htm#associatedReferences-2009-04-24">associatedReferences-2009-04-24</a></TD></TR> <TR><TD>Class:</TD><TD>http://rs.tdwg.org/dwc/terms/Occurrence</TD></TR>
<TR><TH colspan="2"><A name="verbatimCoordinates-2009-04-24">Term Name: verbatimCoordinates</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/verbatimCoordinates</TD></TR> <TR><TD>INSDC Label:</TD><TD>lat_lon</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Verbatim Coordinates</TD></TR> <TR><TD>Definition:</TD><TD>The verbatim original spatial coordinates of the Location. The coordinate ellipsoid, geodeticDatum, or full Spatial Reference System (SRS) for these coordinates should be stored in verbatimSRS and the coordinate system should be stored in verbatimCoordinateSystem.</TD></TR> <TR><TD>Comment:</TD><TD>Examples: "41 05 54S 121 05 34W", "17T 630000 4833400". For discussion see <a href="http://code.google.com/p/darwincore/wiki/Location">http://code.google.com/p/darwincore/wiki/Location</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-07-06</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>verbatimCoordinates-2009-04-24</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#lat_lon-2011-01-26">lat_lon-2011-01-26</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>
<TR><TH colspan="2"><A name="verbatimDepth-2009-04-24">Term Name: verbatimDepth</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/verbatimDepth</TD></TR> <TR><TD>INSDC Label:</TD><TD>depth</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Verbatim Depth</TD></TR> <TR><TD>Definition:</TD><TD>The original description of the depth below the local surface.</TD></TR> <TR><TD>Comment:</TD><TD>Example: "100-200 m". For discussion see <a href="http://code.google.com/p/darwincore/wiki/Location">http://code.google.com/p/darwincore/wiki/Location</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-04-24</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>verbatimDepth-2009-04-24</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#depth-2011-01-26">depth-2011-01-26</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>
<TR><TH colspan="2"><A name="verbatimElevation-2009-04-24">Term Name: verbatimElevation</A></TH></TR> <TR><TD>Identifier:</TD><TD>http://rs.tdwg.org/dwc/terms/verbatimElevation</TD></TR> <TR><TD>INSDC Label:</TD><TD>alt_elev</TD></TR> <TR><TD>Namespace:</TD><TD>http://rs.tdwg.org/dwc/terms/</TD></TR> <TR><TD>Label:</TD><TD>Verbatim Elevation</TD></TR> <TR><TD>Definition:</TD><TD>The original description of the elevation (altitude, usually above sea level) of the Location.</TD></TR> <TR><TD>Comment:</TD><TD>Example: "100-200 m". For discussion see <a href="http://code.google.com/p/darwincore/wiki/Location">http://code.google.com/p/darwincore/wiki/Location</a></TD></TR> <TR><TD>Type of Term:</TD><TD>http://www.w3.org/1999/02/22-rdf-syntax-ns#Property</TD></TR> <TR><TD>Refines:</TD><TD></TD></TR> <TR><TD>Status:</TD><TD>recommended</TD></TR> <TR><TD>Date Issued:</TD><TD>2008-11-19</TD></TR> <TR><TD>Date Modified:</TD><TD>2009-04-24</TD></TR>  <TR><TD>Has Domain:</TD><TD></TD></TR> <TR><TD>Has Range:</TD><TD></TD></TR>  <TR><TD>Version:</TD><TD>verbatimElevation-2009-04-24</TD></TR> <TR><TD>Replaces:</TD><TD><a href="./index.htm#alt_elev-2011-01-26">alt_elev-2011-01-26</a></TD></TR> <TR><TD>Is Replaced By:</TD><TD></TD></TR> <TR><TD>Class:</TD><TD>http://purl.org/dc/terms/Location</TD></TR>

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